from tensorflow import keras from keras import backend as K def f1(y_true, y_pred): """Calculate f1 score based on precision/recall metrics defined within the function Args: y_true (numpy.array): the true labels of the data y_pred (numpy.array): the predicted labels of the data Returns: numpy.array: f1 scores """ def recall(y_true, y_pred): """Recall metric. Only computes a batch-wise average of recall. Computes the recall, a metric for multi-label classification of how many relevant items are selected. """ true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1))) possible_positives = K.sum(K.round(K.clip(y_true, 0, 1))) recall = true_positives / (possible_positives + K.epsilon()) return recall def precision(y_true, y_pred): """Precision metric. Only computes a batch-wise average of precision. Computes the precision, a metric for multi-label classification of how many selected items are relevant. """ true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1))) predicted_positives = K.sum(K.round(K.clip(y_pred, 0, 1))) precision = true_positives / (predicted_positives + K.epsilon()) return precision precision = precision(y_true, y_pred) recall = recall(y_true, y_pred) return 2*((precision*recall)/(precision+recall+K.epsilon())) METRICS = [ keras.metrics.TruePositives(name='tp'), keras.metrics.FalsePositives(name='fp'), keras.metrics.TrueNegatives(name='tn'), keras.metrics.FalseNegatives(name='fn'), keras.metrics.BinaryAccuracy(name='accuracy'), keras.metrics.Precision(name='precision'), keras.metrics.Recall(name='recall'), keras.metrics.AUC(name='auc'), f1 ] early_stopping = keras.callbacks.EarlyStopping( monitor='val_auc', verbose=1, patience=10, mode='max', restore_best_weights=True)