version: 0.2
env:
  shell: bash
phases:
  install:
    runtime-versions:
      python: 3.9
  build:
    commands:
      - |
        #!/bin/bash
        lambda_s3_dirname=${RESOURCES_PREFIX}
        artifact_s3_dirname=${RESOURCES_PREFIX}

        # Declare all lambda functions with package needs (crhelper needed since these lambdas help with resource creation)
        declare -a LambdaNamesWithCrHelper=("import_reference_lambda" "import_annotation_lambda" "add_bucket_notification_lambda")

        # iterate over each lambda
        for lambda in ${LambdaNamesWithCrHelper[@]}; do

          COUNT=$(aws s3 ls "s3://${RESOURCES_BUCKET}/${lambda_s3_dirname}${lambda}.py" | wc -l)
          if [ $COUNT = 0 ]; then
              echo "skipping Build, ${lambda}.py not found in  s3://${RESOURCES_BUCKET}/${lambda_s3_dirname}"
          else
            echo "Building lambda zip for: ${lambda} "
            mkdir tmp_${lambda}
            cd tmp_${lambda}
            echo "Download lambda py for: ${lambda} "
            aws s3 cp s3://${RESOURCES_BUCKET}/${lambda_s3_dirname}${lambda}.py .
            echo "Installing pip packages"
            pip install crhelper boto3==1.26.65 -t ./package
            cd ./package
            zip -r ../${lambda}.zip *
            cd ..
            echo "Zip lambda to artifact"
            zip -g ${lambda}.zip ${lambda}.py
            echo "Upload zip to s3://${RESOURCES_BUCKET}/${artifact_s3_dirname}"
            aws s3 cp ${lambda}.zip s3://${RESOURCES_BUCKET}/${artifact_s3_dirname}
            cd ..
            rm -rf tmp_${lambda}
            echo "Done with ${lambda}"
          fi
        done

        # Declare all lambda functions with package needs
        declare -a LambdaNamesJsonSchema=("apply_s3_lifecycle_lambda" "lambda_check_omics_workflow_task" "import_sequence_lambda" "import_variant_lambda" "lambda_launch_genomics_sfn"  "start_workflow_lambda")

        # iterate over each lambda
        for lambda in ${LambdaNamesJsonSchema[@]}; do

          COUNT=$(aws s3 ls "s3://${RESOURCES_BUCKET}/${lambda_s3_dirname}${lambda}.py" | wc -l)
          if [ $COUNT = 0 ]; then
              echo "skipping Build, ${lambda}.py not found in  s3://${RESOURCES_BUCKET}/${lambda_s3_dirname}"
          else
            echo "Building lambda zip for: ${lambda} "
            mkdir tmp_${lambda}
            cd tmp_${lambda}
            echo "Download lambda py for: ${lambda} "
            aws s3 cp s3://${RESOURCES_BUCKET}/${lambda_s3_dirname}${lambda}.py .
            echo "Installing pip packages"
            pip install jsonschema boto3==1.26.65 -t ./package
            cd ./package
            zip -r ../${lambda}.zip *
            cd ..
            echo "Zip lambda to artifact"
            zip -g ${lambda}.zip ${lambda}.py
            echo "Upload zip to s3://${RESOURCES_BUCKET}/${artifact_s3_dirname}"
            aws s3 cp ${lambda}.zip s3://${RESOURCES_BUCKET}/${artifact_s3_dirname}
            cd ..
            rm -rf tmp_${lambda}
            echo "Done with ${lambda}"
          fi
        done