#!/bin/bash # Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved. # SPDX-License-Identifier: MIT-0 # # Permission is hereby granted, free of charge, to any person obtaining a copy of this # software and associated documentation files (the "Software"), to deal in the Software # without restriction, including without limitation the rights to use, copy, modify, # merge, publish, distribute, sublicense, and/or sell copies of the Software, and to # permit persons to whom the Software is furnished to do so. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, # INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A # PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT # HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION # OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE # SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. set -e MODULES_PATH="/usr/share/Modules/modulefiles" PACKAGE_NAME="pio" PACKAGE_VERSION="2.5.4" DEPENDS_ON="hdf5-parallel/1.10.6 pnetcdf/1.12.2 netcdf-c/4.7.4 netcdf-fortran/4.5.3" PACKAGE_ARCHIVE="${PACKAGE_NAME}${PACKAGE_VERSION//./_}/${PACKAGE_NAME}-${PACKAGE_VERSION}.tar.gz" PACKAGE_TAR=$(echo $PACKAGE_ARCHIVE | cut -d'/' -f2) PACKAGE_URL="https://github.com/NCAR/ParallelIO/releases/download/${PACKAGE_ARCHIVE}" show_help() { cat << EOF Usage: ${0##*/} [-hv] -h display this help and exit -v PIO_VERSION PIO Version EOF } show_default() { cat << EOF No PIO Version specified Using default: ${PIO_VERSION} EOF } # Parse options OPTIND=1 # Reset if getopts used previously if (($# == 0)); then show_default fi while getopts ":v:h:c:" opt; do case ${opt} in v ) PIO_VERSION=$OPTARG ;; c ) ENVIRONMENT=$OPTARG ;; h ) show_help exit 0 ;; * ) show_help exit 0 ;; esac done yum install -y \ curl-devel \ gcc \ gcc-c++ \ gcc-gfortran \ git \ hostname \ make \ man \ man-pages #Load module source /etc/profile.d/modules.sh # Find parent path PARENT_PATH=$( cd "$(dirname "${BASH_SOURCE[0]}")" ; pwd -P ) # Modules function source ${PARENT_PATH}/modules_functions.sh #Load compilers for comp_mpi in $ENVIRONMENT do load_environment $comp_mpi "$DEPENDS_ON" PACKAGE_PATH="/opt/${PACKAGE_NAME}/${PACKAGE_VERSION}/${compiler_name}/${compiler_version}" # Check if already installed if [ -d ${PACKAGE_PATH} ]; then echo "${PACKAGE_NAME} already installed in ${PACKAGE_PATH}" continue fi # Create build directory in /tmp WORKDIR=`mktemp -d -p /tmp -t ${PACKAGE_NAME}_XXXXXXXXXXXX` cd ${WORKDIR} # Retrieve archive if [ ! -f ${PACKAGE_TAR} ]; then echo "Download archive" wget ${PACKAGE_URL} fi # Check if archive already exist untar if [ ! -d ${PACKAGE_TAR} ]; then echo "Extract archive" tar xzf ${PACKAGE_TAR} fi cd ${PACKAGE_NAME}-${PACKAGE_VERSION} ./configure \ CC=mpicc \ CXX=mpicxx \ FC=mpif90 \ --prefix=${PACKAGE_PATH} \ --enable-fortran \ --enable-netcdf-integration make -j make install mkdir -p ${MODULES_PATH}/${PACKAGE_NAME} #Create module file cat > ${MODULES_PATH}/${PACKAGE_NAME}/${PACKAGE_VERSION}-${compiler_name}-${compiler_version} << EOF #%Module # NOTE: This is an automatically-generated file! proc ModulesHelp { } { puts stderr "This module adds ${PACKAGE_NAME^^} v${PACKAGE_VERSION} to various paths" } module-whatis "Sets up ${PACKAGE_NAME^^} v${PACKAGE_VERSION} in your environment" setenv PIO_HOME "${PACKAGE_PATH}" prepend-path PATH "${PACKAGE_PATH}/bin" prepend-path CPATH "${PACKAGE_PATH}/include" prepend-path LD_LIBRARY_PATH "${PACKAGE_PATH}/lib" prepend-path LIBRARY_PATH "${PACKAGE_PATH}/lib" prepend-path MANPATH "${PACKAGE_PATH}/share/man" EOF #Clean up cd rm -rf ${WORKDIR} done