from pathlib import Path # Simulation Parameters add_ab = False batching = True ab_cost = 28 ab_cost_cheap = 28 pcr_cost = 77 attrition_rate = 0.05 attrition_frequency = 14 time_to_wait_for_antibody_test = 0 time_to_wait_for_pcr_test_results = 2 time_for_incubation = 2 time_to_stop_symptoms = 8 time_self_isolation = 14 ab_false_positive_rate = 1.0 pcr_false_negative_rate = 1.0 pcr_batch_size = 1 init_test_capacity = 1000 init_ab_test_capacity = 100 ab_tests_sent_per_day = 0 time_between_consecutive_pcr_tests = 14 pcr_test_result_positive_probability = 0.01 initial_antibody_immunity_in_population = 0 infected_and_symptomatic_in_population = 0.25 symptom_covid_vs_flu = 0 awaiting_on_pcr_test_result = 0 gap_weeks_between_disease_waves_default = 25 transmission_prob_default = 0.005 wave2_peak_factor_default = 3 wave2_spread_factor_default = 1 number_of_people_to_infect_default = 3 # Infra/data parameters base_data_dir = 'data/input' base_output_dir = 'data/output' sagemaker_run = False base_data_dir_sagemaker = '/opt/ml/processing/input' base_output_dir_sagemaker = '/opt/ml/processing/out' oxcgrt_intervention_data_online = 'https://oxcgrtportal.azurewebsites.net/api/CSVDownload' oxcgrt_intervention_data_offline = 'OxCGRT_Download_Full.csv' intervention_impacts_loc = 'countries_intervention_impacts.csv' intervention_scores_loc = 'countries_aggr_intervention_scores.csv' confirmed_cases_global_online = 'https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/' \ 'csse_covid_19_time_series/time_series_covid19_confirmed_global.csv' recovered_cases_global_online = 'https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/' \ 'csse_covid_19_time_series/time_series_covid19_recovered_global.csv' deceased_cases_global_online = 'https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/' \ 'csse_covid_19_time_series/time_series_covid19_deaths_global.csv' confirmed_cases_global_offline = 'time_series_covid19_confirmed_global.csv' recovered_cases_global_offline = 'time_series_covid19_recovered_global.csv' deceased_cases_global_offline = 'time_series_covid19_deaths_global.csv' country_populations_data = 'country_population_WorldBank.csv' india_states_cases_online = 'https://api.covid19india.org/csv/latest/state_wise_daily.csv' india_states_cases_offline = 'india_state_wise_daily.csv' usa_populations_data_online ='https://www2.census.gov/programs-surveys/popest/datasets/2010-2019/state/detail/SCPRC-EST2019-18+POP-RES.csv' usa_populations_data_offline = 'population_usa_states_census.csv' us_counties_cases_online = 'https://raw.githubusercontent.com/nytimes/covid-19-data/master/us-counties.csv' us_counties_cases_offline = 'us-counties.csv' country_covid19_cases = 'countries/Cases_{}.csv' country_covid19_params_export_path = 'countries/params_{}.csv' country_simulation_results_path = 'countries/projections_{}_{}.csv' country_simulation_data_path = 'countries/sim_data_{}.pkl' state_covid19_cases = 'Cases_{}_{}.csv' us_covid19_cases = 'covid_19_daily_reports_us.csv' state_covid19_params_export_path = 'params_{}_{}.csv' state_simulation_results_path = 'projections_{}_{}.csv' state_simulation_data_path = 'sim_data_{}.pkl' county_cases_filename = Path(__file__).parent / '../data/us-counties_4_26.txt' county_population_filename = Path(__file__).parent / '../data/county-population.csv' # Optimization related parameters # Consider a country for comparison if its total case count exceeds this threshold min_country_conf_case_threshold = 25000 # time window (in days) while measuring periodic changes period = 3 # Percentage/fraction of influence of the interventions on disease transmission intervention_influence_pctg_default = 1.0 # Maximum population size for simulation (higher number will increase the duration of simulation cycles) n_population_max = 3000 # Preferred population size for simulation n_population = 1000 # Minimum existing infection count while initiating the simulation (actual infection rate would be scaled up/down to # ensure this minimum count) min_initial_infection = 5 # Max number of days to fit while optimizing the simulation parameters fitment_period_max = 365 # Min and max range for transmission control optimization transmission_control_range_min = 0.05 transmission_control_range_max = 1.0 # Default min and max number of weeks to reach wave-1 peak for optimization wave1_weeks_default_range_low = 1 wave1_weeks_default_range_high = 5 # Optimization trials (runs) min and max, and job count optimization_trials_low = 40 optimization_trials_high = 60 optimization_jobs = 4